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Tuberculosis of nervous system

EFO Endpoint Browser

AB1_TUBERCU_NEU

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A17
  • Hospital discharge: ICD-9 — 01[3]
  • Hospital discharge: ICD-8 — 01[3]
  • Cause of death: ICD-10 — A17
  • Cause of death: ICD-9 — 01[3]
  • Cause of death: ICD-8 — 01[3]

2 out of 7 registries used, show all original rules.

43

4. Check minimum number of events

None

43

5. Include endpoints

None

43

6. Filter based on genotype QC (FinnGen only)

39

Control definitions (FinnGen only)

Control exclude AB1_TUBERCULOSIS

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF5

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 600 293 286
Only index persons 340 181 159
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 58.42 59.18 58.14
Only index persons 50.32 47.69 53.31

-FinnGen-

Key figures

All Female Male
Number of individuals 39 20 19
Unadjusted period prevalence (%) 0.01 0.01 0.01
Median age at first event (years) 50.56 39.76 61.92

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_TUBERCU_NEU – Tuberculosis of nervous system

GWS hits: -

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