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Bacterial pneumonia (organism specified)

PNEUMOBACTKNOWN

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 J13, J14, J15, J16, J17*
  • Hospital discharge: ICD-9 48[1-3]
  • Hospital discharge: ICD-8 48199|482
  • Cause of death: ICD-10 J13, J14, J15, J16, J17*
  • Cause of death: ICD-9 48[1-3]
  • Cause of death: ICD-8 48199|482

2 out of 7 registries used, show all original rules.

18818

4. Check minimum number of events

None

18818

5. Include endpoints

None

18818

6. Filter based on genotype QC (FinnGen only)

18148

Control definitions (FinnGen only)

Control exclude ASTHMA_PNEUMONIA

Extra metadata

First used in FinnGen datafreeze DF2

Similar endpoints

List of similar endpoints to Bacterial pneumonia (organism specified) based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Broader endpoints:

Venn diagram with a set fully inside an highlighted set Narrower endpoints:

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 18148 7367 10781
Unadjusted period prevalence (%) 4.82 3.20 5.93
Median age at first event (years) 62.50 55.13 67.54

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

Mortality – FinRegistry

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

Index endpoint: PNEUMOBACTKNOWN – Bacterial pneumonia (organism specified)

GWS hits: -

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