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Viral pneumonia (unknown virus, not influenza)

DOID EFO Endpoint Browser PheWeb

VIRALPNEUMONAS

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — J12.8, J12.9
  • Hospital discharge: ICD-9 — 480
  • Hospital discharge: ICD-8 — 480
  • Hospital discharge: excluded ICD-9 — 480[0-2]
  • Cause of death: ICD-10 — J12.8, J12.9
  • Cause of death: ICD-9 — 480
  • Cause of death: ICD-8 — 480
  • Cause of death: excluded ICD-9 — 480[0-2]

2 out of 7 registries used, show all original rules.

1807

4. Check minimum number of events

None

1807

5. Include endpoints

None

1807

6. Filter based on genotype QC (FinnGen only)

1683

Control definitions (FinnGen only)

Control exclude ASTHMA_PNEUMONIA

Extra metadata

First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 22206 9354 12641
Only index persons 17921 7501 10420
Unadjusted period prevalence (%)
Whole population 0.32 0.27 0.35
Only index persons 0.35 0.28 0.40
Median age at first event (years)
Whole population 26.87 35.15 20.24
Only index persons 21.48 24.06 19.62

-FinnGen-

Key figures

All Female Male
Number of individuals 1683 792 891
Unadjusted period prevalence (%) 0.42 0.34 0.49
Median age at first event (years) 44.20 41.75 46.37

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: VIRALPNEUMONAS – Viral pneumonia (unknown virus, not influenza)

GWS hits: -

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