Viral pneumonia (known virus, not influenza)

VIRALPNEUMOKNOWN

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 B012|B052|B206|B250|J12[0-2]|J171
  • Hospital discharge: ICD-9 480[0-2]
  • Cause of death: ICD-10 B012|B052|B206|B250|J12[0-2]|J171
  • Cause of death: ICD-9 480[0-2]

2 out of 7 registries used, show all original rules.

595

4. Check minimum number of events

None

595

5. Include endpoints

None

595

6. Filter based on genotype QC (FinnGen only)

564

Control definitions (FinnGen only)

Control exclude ASTHMA_PNEUMONIA

Extra metadata

First used in FinnGen datafreeze DF2

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 7453 3529 3892
Only index persons 5766 2742 3024
Unadjusted period prevalence (%)
Whole population 0.10 0.10 0.11
Only index persons 0.11 0.10 0.12
Median age at first event (years)
Whole population 29.10 37.36 21.47
Only index persons 53.85 61.94 46.52

-FinnGen-

Key figures

All Female Male
Number of individuals 564 260 304
Unadjusted period prevalence (%) 0.14 0.11 0.17
Median age at first event (years) 64.61 60.86 67.83

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Relationships between endpoints

Index endpoint: VIRALPNEUMOKNOWN – Viral pneumonia (known virus, not influenza)

GWS hits: -

loading spinner Loading Relationships table