Congenital malformations and deformations of the musculoskeletal system

Q17_CONGEN_MALFO_DEFORMAT_MUSCULOS_SYSTEM

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 Q65-Q79
  • Cause of death: ICD-10 Q65-Q79

2 out of 7 registries used, show all original rules.

3013

4. Check minimum number of events

None

3013

5. Include endpoints

3013

6. Filter based on genotype QC (FinnGen only)

2877

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF4
Parent code in ICD-10 Q
Name in latin Malformationes et deformationes congenitae systematis musculosceletalis

Similar endpoints

List of similar endpoints to Congenital malformations and deformations of the musculoskeletal system based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Broader endpoints:

Venn diagram with a set fully inside an highlighted set Narrower endpoints:

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 59624 31155 28397
Only index persons 44933 23495 21438
Unadjusted period prevalence (%)
Whole population 0.84 0.89 0.79
Only index persons 0.84 0.86 0.82
Median age at first event (years)
Whole population 4.18 3.46 4.90
Only index persons 11.50 11.83 11.13

-FinnGen-

Key figures

All Female Male
Number of individuals 2877 1923 954
Unadjusted period prevalence (%) 0.73 0.84 0.52
Median age at first event (years) 29.70 32.75 23.55

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Relationships between endpoints

Index endpoint: Q17_CONGEN_MALFO_DEFORMAT_MUSCULOS_SYSTEM – Congenital malformations and deformations of the musculoskeletal system

GWS hits: 1

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