≡ Risteys
FR+FG R10

Documentation Changelog GitHub Contact & Feedback

Cleft palate

DOID EFO Endpoint Browser PheWeb

Q17_CLEFT_PALATE

obsolete_cleft palate: ['Congenital fissure of the soft and/or hard palate, due to faulty fusion.']

Suggest a new description

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

  • not Q17_CLEFT_PALATE_EXCLUDE
428574

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — Q35
  • Hospital discharge: ICD-9 — 7490[ABCE]
  • Hospital discharge: ICD-8 — 74900
  • Cause of death: ICD-10 — Q35
  • Cause of death: ICD-9 — 7490[ABCE]
  • Cause of death: ICD-8 — 74900

2 out of 7 registries used, show all original rules.

330

4. Check minimum number of events

None

330

5. Include endpoints

None

330

6. Filter based on genotype QC (FinnGen only)

319

Control definitions (FinnGen only)

Control exclude Q17_CLEFT_LIP_CLEFT_PALATE

Extra metadata

First used in FinnGen datafreeze DF7

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 5369 3001 2360
Only index persons 4471 2522 1949
Unadjusted period prevalence (%)
Whole population 0.08 0.09 0.07
Only index persons 0.08 0.09 0.07
Median age at first event (years)
Whole population 1.83 1.71 1.86
Only index persons 1.89 1.81 1.99

-FinnGen-

Key figures

All Female Male
Number of individuals 319 218 101
Unadjusted period prevalence (%) 0.08 0.09 0.06
Median age at first event (years) 2.84 2.16 4.33

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

↥

Relationships between endpoints

↥

Index endpoint: Q17_CLEFT_PALATE – Cleft palate

GWS hits: 4

loading spinner Loading Relationships table