Malignant cancer of tonsil and base of tongue

C3_TONSIL_BASETONGUE

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Cause of death: ICD-10 C01&, C09
  • Cancer registry: Topography ICD-O-3 C01|C09
  • Cancer registry: Morphology ICD-O-3 ANY
  • Cancer registry: Behaviour codes 3

2 out of 7 registries used, show all original rules.

480

4. Check minimum number of events

None

480

5. Include endpoints

None

480

6. Filter based on genotype QC (FinnGen only)

464

Control definitions (FinnGen only)

Control exclude C3_CANCER, C3_CANCER_WIDE

Extra metadata

Level in the ICD hierarchy C
First used in FinnGen datafreeze DF9

Similar endpoints

List of similar endpoints to Malignant cancer of tonsil and base of tongue based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Broader endpoints:

Venn diagram with a set fully inside an highlighted set Narrower endpoints:

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 4003 1269 2643
Only index persons 2872 958 1914
Unadjusted period prevalence (%)
Whole population 0.06 0.04 0.07
Only index persons 0.06 0.04 0.07
Median age at first event (years)
Whole population 62.22 64.11 61.29
Only index persons 62.15 63.67 61.39

-FinnGen-

Key figures

All Female Male
Number of individuals 464 129 335
Unadjusted period prevalence (%) 0.15 0.06 0.18
Median age at first event (years) 61.34 61.92 61.11

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Relationships between endpoints

Index endpoint: C3_TONSIL_BASETONGUE – Malignant cancer of tonsil and base of tongue

GWS hits: -

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