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Malignant neoplasm of oral cavity (controls excluding all cancers)

Endpoint Browser PheWeb

C3_ORALCAVITY_EXALLC

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

None

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2. Check conditions

None

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Cause of death: ICD-10 — C01&, C02, C03, C04, C05, C06
  • Cause of death: ICD-9 — 141|14[3-5]
  • Cause of death: ICD-8 — 141|14[3-5]
  • Cancer registry: Topography ICD-O-3 — C0[1-6]
  • Cancer registry: Morphology ICD-O-3 — ANY
  • Cancer registry: Behaviour codes — 3

2 out of 7 registries used, show all original rules.

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4. Check minimum number of events

None

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5. Include endpoints

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6. Filter based on genotype QC (FinnGen only)

None

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Control definitions (FinnGen only)

Control exclude C3_CANCER, C3_CANCER_WIDE

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF9

Similar endpoints

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List of similar endpoints to Malignant neoplasm of oral cavity (controls excluding all cancers) based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Broader endpoints:

Venn diagram with a set fully inside an highlighted set Narrower endpoints:

Case counts by codes

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FinnGen case counts by registry codes:

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Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 8694 3737 4791
Only index persons 6007 2718 3289
Unadjusted period prevalence (%)
Whole population 0.12 0.11 0.13
Only index persons 0.11 0.10 0.13
Median age at first event (years)
Whole population 64.67 67.57 62.50
Only index persons 64.73 66.87 62.95

-FinnGen-

Key figures

All Female Male
Number of individuals 832 333 499
Unadjusted period prevalence (%) 0.22 0.14 0.27
Median age at first event (years) 63.75 63.86 63.68

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: C3_ORALCAVITY_EXALLC – Malignant neoplasm of oral cavity (controls excluding all cancers)

GWS hits: 1

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