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Other specified/unspecified bacterial intestinal infections

DOID EFO Endpoint Browser PheWeb

BACT_INTEST_INFECTION_NOS

dysentery: Acute inflammation of the intestine associated with infectious diarrhea of various etiologies, generally acquired by eating contaminated food containing toxins, biological derived from bacteria or other microorganisms. Dysentery is characterized initially by watery feces then by bloody mucoid stools. It is often associated with abdominal pain; fever; and dehydration.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A04.8, A04.9
  • Hospital discharge: ICD-9 — 0085X
  • Hospital discharge: ICD-8 — 008[2-3]
  • Cause of death: ICD-10 — A04.8, A04.9
  • Cause of death: ICD-9 — 0085X
  • Cause of death: ICD-8 — 008[2-3]

2 out of 7 registries used, show all original rules.

2041

4. Check minimum number of events

None

2041

5. Include endpoints

None

2041

6. Filter based on genotype QC (FinnGen only)

1913

Control definitions (FinnGen only)

Control exclude IBD_BACT_INTEST_INFECTIONS

Extra metadata

First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 19610 10540 8850
Only index persons 17779 9739 8040
Unadjusted period prevalence (%)
Whole population 0.28 0.30 0.25
Only index persons 0.33 0.36 0.31
Median age at first event (years)
Whole population 56.05 57.55 54.55
Only index persons 55.03 56.29 53.51

-FinnGen-

Key figures

All Female Male
Number of individuals 1913 1105 808
Unadjusted period prevalence (%) 0.46 0.48 0.44
Median age at first event (years) 57.68 55.58 60.56

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: BACT_INTEST_INFECTION_NOS – Other specified/unspecified bacterial intestinal infections

GWS hits: -

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