≡ Risteys
FR+FG R10

Documentation Changelog GitHub Contact & Feedback

Tuberculosis of other organs

EFO Endpoint Browser PheWeb

AB1_TUBERCU_OTH_ORG

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A18
  • Hospital discharge: ICD-9 — 0[1]
  • Hospital discharge: ICD-8 — 0[1]
  • Hospital discharge: excluded ICD-9 — 01[1-3]|018
  • Hospital discharge: excluded ICD-8 — 01[1-3]|018
  • Cause of death: ICD-10 — A18
  • Cause of death: ICD-9 — 0[1]
  • Cause of death: ICD-8 — 0[1]
  • Cause of death: excluded ICD-9 — 01[1-3]|018
  • Cause of death: excluded ICD-8 — 01[1-3]|018

2 out of 7 registries used, show all original rules.

767

4. Check minimum number of events

None

767

5. Include endpoints

None

767

6. Filter based on genotype QC (FinnGen only)

724

Control definitions (FinnGen only)

Control exclude AB1_TUBERCULOSIS

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF5

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 14840 7877 6491
Only index persons 8037 4922 3115
Unadjusted period prevalence (%)
Whole population 0.21 0.23 0.18
Only index persons 0.16 0.18 0.12
Median age at first event (years)
Whole population 54.25 54.45 54.01
Only index persons 46.80 48.59 43.96

-FinnGen-

Key figures

All Female Male
Number of individuals 724 350 374
Unadjusted period prevalence (%) 0.18 0.15 0.21
Median age at first event (years) 48.19 44.33 51.80

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

↥

Relationships between endpoints

↥

Index endpoint: AB1_TUBERCU_OTH_ORG – Tuberculosis of other organs

GWS hits: -

loading spinner Loading Relationships table