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Other spirochaetal diseases

DOID EFO Endpoint Browser PheWeb

AB1_OTHER_SPIROCHAETAL

Pinta: An infectious disease of the skin caused by Treponema carateum that occurs only in the western hemisphere. Age of onset is between 10 and 20 years of age. This condition is characterized by marked changes in the skin color and is believed to be transmitted by direct person-to-person contact.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A65-A69
  • Hospital discharge: ICD-9 — 104|08[7-7]
  • Hospital discharge: ICD-8 — 08[8-9]
  • Cause of death: ICD-10 — A65-A69
  • Cause of death: ICD-9 — 104|08[7-7]
  • Cause of death: ICD-8 — 08[8-9]

2 out of 7 registries used, show all original rules.

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4. Check minimum number of events

None

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5. Include endpoints

2595

6. Filter based on genotype QC (FinnGen only)

2492

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 22507 12132 10305
Only index persons 20424 11128 9296
Unadjusted period prevalence (%)
Whole population 0.32 0.35 0.29
Only index persons 0.38 0.41 0.35
Median age at first event (years)
Whole population 50.68 51.77 49.40
Only index persons 52.33 53.27 51.20

-FinnGen-

Key figures

All Female Male
Number of individuals 2492 1508 984
Unadjusted period prevalence (%) 0.61 0.65 0.54
Median age at first event (years) 58.12 56.23 61.02

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_OTHER_SPIROCHAETAL – Other spirochaetal diseases

GWS hits: 2

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