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Lyme disease

Endpoint Browser PheWeb

AB1_LYME

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A69.2
  • Hospital discharge: ICD-9 — 1048A
  • Cause of death: ICD-10 — A69.2
  • Cause of death: ICD-9 — 1048A

2 out of 7 registries used, show all original rules.

2454

4. Check minimum number of events

None

2454

5. Include endpoints

None

2454

6. Filter based on genotype QC (FinnGen only)

2357

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF10

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 20068 10963 9048
Only index persons 18434 10171 8263
Unadjusted period prevalence (%)
Whole population 0.29 0.31 0.25
Only index persons 0.35 0.37 0.32
Median age at first event (years)
Whole population 52.90 53.58 52.09
Only index persons 54.33 54.85 53.70

-FinnGen-

Key figures

All Female Male
Number of individuals 2357 1432 925
Unadjusted period prevalence (%) 0.58 0.62 0.51
Median age at first event (years) 58.70 56.90 61.49

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_LYME – Lyme disease

GWS hits: 1

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