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Late syphilis

EFO Endpoint Browser PheWeb

AB1_LATE_SYPHILIS

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A52
  • Hospital discharge: ICD-9 — 09[2-6]
  • Hospital discharge: ICD-8 — 09[2-6]
  • Cause of death: ICD-10 — A52
  • Cause of death: ICD-9 — 09[2-6]
  • Cause of death: ICD-8 — 09[2-6]

2 out of 7 registries used, show all original rules.

384

4. Check minimum number of events

None

384

5. Include endpoints

None

384

6. Filter based on genotype QC (FinnGen only)

359

Control definitions (FinnGen only)

Control exclude AB1_SEXUAL_TRANSMISSION

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF5

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 3066 1237 1781
Only index persons 2556 1053 1503
Unadjusted period prevalence (%)
Whole population 0.04 0.04 0.05
Only index persons 0.05 0.04 0.06
Median age at first event (years)
Whole population 56.97 58.06 56.39
Only index persons 56.43 56.95 56.07

-FinnGen-

Key figures

All Female Male
Number of individuals 359 146 213
Unadjusted period prevalence (%) 0.10 0.06 0.12
Median age at first event (years) 55.42 54.54 56.02

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_LATE_SYPHILIS – Late syphilis

GWS hits: -

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