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Early syphilis

EFO Endpoint Browser PheWeb

AB1_EARLY_SYPHILIS

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A51
  • Hospital discharge: ICD-9 — 09[1]
  • Hospital discharge: ICD-8 — 09[1]
  • Cause of death: ICD-10 — A51
  • Cause of death: ICD-9 — 09[1]
  • Cause of death: ICD-8 — 09[1]

2 out of 7 registries used, show all original rules.

335

4. Check minimum number of events

None

335

5. Include endpoints

None

335

6. Filter based on genotype QC (FinnGen only)

308

Control definitions (FinnGen only)

Control exclude AB1_SEXUAL_TRANSMISSION

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF5

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 2515 815 1643
Only index persons 2222 742 1480
Unadjusted period prevalence (%)
Whole population 0.04 0.02 0.05
Only index persons 0.05 0.03 0.06
Median age at first event (years)
Whole population 36.88 33.67 38.63
Only index persons 36.48 32.83 38.31

-FinnGen-

Key figures

All Female Male
Number of individuals 308 73 235
Unadjusted period prevalence (%) 0.11 0.03 0.13
Median age at first event (years) 39.51 31.31 42.06

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_EARLY_SYPHILIS – Early syphilis

GWS hits: -

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