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Cholera

EFO Endpoint Browser PheWeb

AB1_CHOLERA

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A00
  • Hospital discharge: ICD-9 — 00[1]
  • Hospital discharge: ICD-8 — 00[0]
  • Cause of death: ICD-10 — A00
  • Cause of death: ICD-9 — 00[1]
  • Cause of death: ICD-8 — 00[0]

2 out of 7 registries used, show all original rules.

1407

4. Check minimum number of events

None

1407

5. Include endpoints

None

1407

6. Filter based on genotype QC (FinnGen only)

1385

Control definitions (FinnGen only)

Control exclude AB1_INTESTINAL_INFECTIONS

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF5

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 16427 12352 3911
Only index persons 13094 10691 2403
Unadjusted period prevalence (%)
Whole population 0.29 0.35 0.11
Only index persons 0.34 0.39 0.09
Median age at first event (years)
Whole population 35.38 32.81 42.65
Only index persons 32.09 31.32 35.49

-FinnGen-

Key figures

All Female Male
Number of individuals 1385 1104 281
Unadjusted period prevalence (%) 0.41 0.48 0.15
Median age at first event (years) 31.92 29.68 40.70

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_CHOLERA – Cholera

GWS hits: -

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