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Bacterial, viral and other infectious agents

EFO MESH Endpoint Browser PheWeb

AB1_BACT_BIR_OTHER_INF_AGENTS

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — B9[5-7]
  • Hospital discharge: ICD-9 — 07[9-9]|034[0-0]
  • Hospital discharge: ICD-8 — 034[0-0]|074|078
  • Cause of death: ICD-10 — B9[5-7]
  • Cause of death: ICD-9 — 07[9-9]|034[0-0]
  • Cause of death: ICD-8 — 034[0-0]|074|078

2 out of 7 registries used, show all original rules.

2953

4. Check minimum number of events

None

2953

5. Include endpoints

2953

6. Filter based on genotype QC (FinnGen only)

2852

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 36180 13424 22611
Only index persons 31070 11109 19961
Unadjusted period prevalence (%)
Whole population 0.54 0.38 0.63
Only index persons 0.64 0.41 0.76
Median age at first event (years)
Whole population 20.92 22.23 19.95
Only index persons 20.34 21.08 19.93

-FinnGen-

Key figures

All Female Male
Number of individuals 2852 1229 1623
Unadjusted period prevalence (%) 0.74 0.53 0.89
Median age at first event (years) 21.70 23.26 20.52

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_BACT_BIR_OTHER_INF_AGENTS – Bacterial, viral and other infectious agents

GWS hits: -

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