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Covid-19 confirmed case

EFO Endpoint Browser PheWeb

U22_COVID19_CONFIRMED

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — U071
  • Cause of death: ICD-10 — U071

2 out of 7 registries used, show all original rules.

3118

4. Check minimum number of events

None

3118

5. Include endpoints

None

3118

6. Filter based on genotype QC (FinnGen only)

2856

Control definitions (FinnGen only)

Control conditions not U22_COVID19_SUSPECTED

Extra metadata

First used in FinnGen datafreeze DF6

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 39717 19767 19395
Only index persons 34107 17397 16710
Unadjusted period prevalence (%)
Whole population 0.55 0.57 0.54
Only index persons 0.64 0.64 0.64
Median age at first event (years)
Whole population 38.47 38.63 38.37
Only index persons 42.30 42.00 42.60

-FinnGen-

Key figures

All Female Male
Number of individuals 2856 1722 1134
Unadjusted period prevalence (%) 0.70 0.75 0.62
Median age at first event (years) 53.29 49.73 58.68

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: U22_COVID19_CONFIRMED – Covid-19 confirmed case

GWS hits: -

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