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Caries in Clefts patients

Endpoint Browser PheWeb

Q17_CLEFT_AND_CARIES

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

  • Q17_CLEFT_LIP_CLEFT_PALATE
516

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Primary healthcare outpatient: ICD-10 — K02
  • Hospital discharge: ICD-10 — K02
  • Hospital discharge: ICD-9 — 5210A
  • Hospital discharge: ICD-8 — 52100
  • Cause of death: ICD-10 — K02
  • Cause of death: ICD-9 — 5210A
  • Cause of death: ICD-8 — 52100

3 out of 7 registries used, show all original rules.

278

4. Check minimum number of events

None

278

5. Include endpoints

None

278

6. Filter based on genotype QC (FinnGen only)

266

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

First used in FinnGen datafreeze DF10

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 4252 2191 2056
Only index persons 3920 2029 1891
Unadjusted period prevalence (%)
Whole population 0.06 0.06 0.06
Only index persons 0.07 0.07 0.07
Median age at first event (years)
Whole population 24.85 25.22 24.43
Only index persons 26.57 26.87 26.26

-FinnGen-

Key figures

All Female Male
Number of individuals 266 167 99
Unadjusted period prevalence (%) 0.07 0.07 0.05
Median age at first event (years) 37.47 36.63 38.90

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: Q17_CLEFT_AND_CARIES – Caries in Clefts patients

GWS hits: 2

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