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Chronic gastritis

DOID EFO Endpoint Browser PheWeb

K11_CHRONGASTR

atrophic gastritis: GASTRITIS with atrophy of the GASTRIC MUCOSA, the GASTRIC PARIETAL CELLS, and the mucosal glands leading to ACHLORHYDRIA. Atrophic gastritis usually progresses from chronic gastritis.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — K29.3, K29.4, K29.5
  • Hospital discharge: ICD-9 — 5351|5354
  • Hospital discharge: ICD-8 — 53503
  • Cause of death: ICD-10 — K29.3, K29.4, K29.5
  • Cause of death: ICD-9 — 5351|5354
  • Cause of death: ICD-8 — 53503

2 out of 7 registries used, show all original rules.

10750

4. Check minimum number of events

None

10750

5. Include endpoints

None

10750

6. Filter based on genotype QC (FinnGen only)

10317

Control definitions (FinnGen only)

Control exclude K11_OESSTODUO

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 94876 54175 39802
Only index persons 79526 46950 32576
Unadjusted period prevalence (%)
Whole population 1.36 1.55 1.11
Only index persons 1.53 1.73 1.24
Median age at first event (years)
Whole population 65.45 66.05 64.60
Only index persons 64.03 64.35 63.57

-FinnGen-

Key figures

All Female Male
Number of individuals 10317 5720 4597
Unadjusted period prevalence (%) 2.50 2.48 2.53
Median age at first event (years) 62.07 59.70 65.03

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: K11_CHRONGASTR – Chronic gastritis

GWS hits: 1

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