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Pyothorax

DOID EFO Endpoint Browser PheWeb

J10_PYOTHORAX

pleural empyema: The presence of pus in the thoracic cavity, between the visceral and parietal pleura. [database_cross_reference: NCIT:P378]

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — J86
  • Hospital discharge: ICD-9 — 510
  • Hospital discharge: ICD-8 — 510
  • Cause of death: ICD-10 — J86
  • Cause of death: ICD-9 — 510
  • Cause of death: ICD-8 — 510

2 out of 7 registries used, show all original rules.

1244

4. Check minimum number of events

None

1244

5. Include endpoints

None

1244

6. Filter based on genotype QC (FinnGen only)

1201

Control definitions (FinnGen only)

Control exclude J10_NECROTIC

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 J85-J86
Name in latin Empyema

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 13230 3541 9495
Only index persons 10093 2856 7237
Unadjusted period prevalence (%)
Whole population 0.22 0.10 0.27
Only index persons 0.23 0.10 0.28
Median age at first event (years)
Whole population 60.81 62.09 60.28
Only index persons 60.34 61.54 59.86

-FinnGen-

Key figures

All Female Male
Number of individuals 1201 312 889
Unadjusted period prevalence (%) 0.40 0.14 0.49
Median age at first event (years) 63.11 57.64 65.03

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: J10_PYOTHORAX – Pyothorax

GWS hits: -

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