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Acute pharyngitis

DOID EFO Endpoint Browser PheWeb

J10_PHARYNGITIS

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — J02
  • Hospital discharge: ICD-9 — 462
  • Hospital discharge: ICD-8 — 462
  • Cause of death: ICD-10 — J02
  • Cause of death: ICD-9 — 462
  • Cause of death: ICD-8 — 462

2 out of 7 registries used, show all original rules.

5502

4. Check minimum number of events

None

5502

5. Include endpoints

None

5502

6. Filter based on genotype QC (FinnGen only)

5295

Control definitions (FinnGen only)

Control exclude J10_UPPERINFEC

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 J00-J06
Name in latin Pharyngitis acuta

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 90684 39064 51242
Only index persons 76024 32838 43186
Unadjusted period prevalence (%)
Whole population 1.29 1.12 1.43
Only index persons 1.46 1.21 1.65
Median age at first event (years)
Whole population 19.66 19.37 19.79
Only index persons 20.72 21.59 20.06

-FinnGen-

Key figures

All Female Male
Number of individuals 5295 2697 2598
Unadjusted period prevalence (%) 1.30 1.17 1.43
Median age at first event (years) 26.02 31.21 20.64

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: J10_PHARYNGITIS – Acute pharyngitis

GWS hits: -

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