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Abscess of lung

DOID EFO Endpoint Browser PheWeb

J10_ABSCLUNGPNEUMO

Lung Abscess: Solitary or multiple collections of PUS within the lung parenchyma as a result of infection by bacteria, protozoa, or other agents.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — J85.1, J85.2
  • Hospital discharge: ICD-9 — 5130
  • Hospital discharge: ICD-8 — 51399
  • Cause of death: ICD-10 — J85.1, J85.2
  • Cause of death: ICD-9 — 5130
  • Cause of death: ICD-8 — 51399

2 out of 7 registries used, show all original rules.

439

4. Check minimum number of events

None

439

5. Include endpoints

None

439

6. Filter based on genotype QC (FinnGen only)

416

Control definitions (FinnGen only)

Control exclude J10_NECROTIC

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 5076 1557 3417
Only index persons 3512 1180 2332
Unadjusted period prevalence (%)
Whole population 0.08 0.04 0.10
Only index persons 0.07 0.04 0.09
Median age at first event (years)
Whole population 60.33 62.79 59.15
Only index persons 58.66 60.67 57.65

-FinnGen-

Key figures

All Female Male
Number of individuals 416 113 303
Unadjusted period prevalence (%) 0.13 0.05 0.17
Median age at first event (years) 60.28 56.36 61.74

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: J10_ABSCLUNGPNEUMO – Abscess of lung

GWS hits: 1

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