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Other mental disorders due to brain damage and dysfunction and to physical disease

EFO MESH Endpoint Browser PheWeb

F5_MENTORG

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — F06
  • Hospital discharge: ICD-9 — 2938|2939
  • Hospital discharge: ICD-8 — 294|309
  • Hospital discharge: excluded ICD-8 — 2944|2943
  • Cause of death: ICD-10 — F06
  • Cause of death: ICD-9 — 2938|2939
  • Cause of death: ICD-8 — 294|309

2 out of 7 registries used, show all original rules.

3516

4. Check minimum number of events

None

3516

5. Include endpoints

None

3516

6. Filter based on genotype QC (FinnGen only)

3385

Control definitions (FinnGen only)

Control exclude F5_ORGANIC

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 F04-F09
Name in latin Aliae perturbationes mentis ab laesione sive dysfunctione cerebri sive morbo somatico inductae

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 38591 19809 18505
Only index persons 33680 17739 15941
Unadjusted period prevalence (%)
Whole population 0.54 0.57 0.52
Only index persons 0.63 0.65 0.61
Median age at first event (years)
Whole population 71.15 74.89 67.27
Only index persons 71.89 75.22 68.19

-FinnGen-

Key figures

All Female Male
Number of individuals 3385 1603 1782
Unadjusted period prevalence (%) 0.85 0.70 0.98
Median age at first event (years) 70.11 70.05 70.16

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: F5_MENTORG – Other mental disorders due to brain damage and dysfunction and to physical disease

GWS hits: 2

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