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Small cell lung cancer (controls excluding all cancers)

Endpoint Browser PheWeb

C3_SCLC_EXALLC

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

None

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2. Check conditions

  • HLP_C3_SCLC
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3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Cause of death: ICD-10 — C34
  • Cause of death: ICD-9 — 162
  • Cause of death: ICD-8 — 162
  • Cancer registry: Topography ICD-O-3 — C34
  • Cancer registry: Morphology ICD-O-3 — 8041
  • Cancer registry: Behaviour codes — 3

2 out of 7 registries used, show all original rules.

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4. Check minimum number of events

None

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5. Include endpoints

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6. Filter based on genotype QC (FinnGen only)

None

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Control definitions (FinnGen only)

Control exclude C3_CANCER, C3_CANCER_WIDE
Control conditions not HLP_C3_SCLC

Extra metadata

Level in the ICD hierarchy C
First used in FinnGen datafreeze DF8

Case counts by codes

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FinnGen case counts by registry codes:

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Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 12835 3017 9266
Only index persons 4218 1564 2654
Unadjusted period prevalence (%)
Whole population 0.23 0.09 0.26
Only index persons 0.09 0.06 0.10
Median age at first event (years)
Whole population 66.17 66.89 66.00
Only index persons 68.92 68.58 69.11

-FinnGen-

Key figures

All Female Male
Number of individuals 717 133 584
Unadjusted period prevalence (%) 0.27 0.06 0.32
Median age at first event (years) 70.81 67.45 71.57

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: C3_SCLC_EXALLC – Small cell lung cancer (controls excluding all cancers)

GWS hits: -

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