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Sequelae of infectious and parasitic diseases

EFO MESH Endpoint Browser PheWeb

AB1_SEQULEAE_OF_INFECTIONS_AND_PARASITES

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — B90-B94
  • Hospital discharge: ICD-9 — 13[7-9]
  • Hospital discharge: ICD-8 — 019|044|066
  • Cause of death: ICD-10 — B90-B94
  • Cause of death: ICD-9 — 13[7-9]
  • Cause of death: ICD-8 — 019|044|066

2 out of 7 registries used, show all original rules.

950

4. Check minimum number of events

None

950

5. Include endpoints

2724

6. Filter based on genotype QC (FinnGen only)

2645

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 38037 16544 20739
Only index persons 26574 12375 14199
Unadjusted period prevalence (%)
Whole population 0.54 0.47 0.58
Only index persons 0.50 0.45 0.54
Median age at first event (years)
Whole population 38.55 41.13 35.62
Only index persons 23.03 26.29 20.18

-FinnGen-

Key figures

All Female Male
Number of individuals 2645 1241 1404
Unadjusted period prevalence (%) 0.66 0.54 0.77
Median age at first event (years) 24.69 19.65 29.14

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_SEQULEAE_OF_INFECTIONS_AND_PARASITES – Sequelae of infectious and parasitic diseases

GWS hits: 1

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