Other viral diseases

AB1_OTHER_VIRAL

Arbovirus Infections: Infections caused by arthropod-borne viruses, general or unspecified.

Endpoint definition

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Endpoint definition steps	FinnGen
Phenotype data	429209
1. Apply sex-specific rule None	429209
2. Check conditions None	429209
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — B25-B34 Hospital discharge: ICD-9 — 078[5-5]\|078[7-8] Hospital discharge: ICD-8 — 075\|079[2-9] Cause of death: ICD-10 — B25-B34 Cause of death: ICD-9 — 078[5-5]\|078[7-8] Cause of death: ICD-8 — 075\|079[2-9] 2 out of 7 registries used, show all original rules.	8579
4. Check minimum number of events None	8579
5. Include endpoints AB1_CMV AB1_MUMPS AB1_EBV AB1_VIRAAL_CONJUNCT AB1_VIRAL_NOS	11619
6. Filter based on genotype QC (FinnGen only)	11207

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2

First used in FinnGen datafreeze DF2

NAME	AB1_OTHER_VIRAL
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE	AB1_CMV\|AB1_MUMPS\|AB1_EBV\|AB1_VIRAAL_CONJUNCT\|AB1_VIRAL_NOS
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	B2[5-9]\|B3[0-4]
HD_ICD_9	078[5-5]\|078[7-8]
HD_ICD_8	075\|079[2-9]
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	B2[5-9]\|B3[0-4]
COD_ICD_9	078[5-5]\|078[7-8]
COD_ICD_8	075\|079[2-9]
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

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List of similar endpoints to Other viral diseases based on the number of shared cases.

Broader endpoints:

Certain infectious and parasitic diseases

Narrower endpoints:

Case counts by codes

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FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

	All	Female	Male
Number of individuals
Whole population	173250	83734	88943
Only index persons	145681	71009	74672
Unadjusted period prevalence (%)
Whole population	2.44	2.40	2.49
Only index persons	2.73	2.61	2.85
Median age at first event (years)
Whole population	16.67	16.78	16.42
Only index persons	17.83	17.79	17.88

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	11207	6513	4694
Unadjusted period prevalence (%)	2.73	2.83	2.58
Median age at first event (years)	22.62	21.48	24.20

≡ Risteys

FR+FG R10

FinnGen Risteys R10

FinnGen Risteys R9

FinnGen Risteys R8

FinnGen Risteys R7

FinnGen Risteys R6

FinnGen Risteys R5

FinnGen Risteys R4

FinnGen Risteys R3

Other viral diseases

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Other viral diseases (AB1_OTHER_VIRAL)

Summary Statistics

-FinRegistry-

Key figures

-FinnGen-

Key figures

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Relationships between endpoints