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Other diseases caused by chlamydiae

DOID EFO Endpoint Browser PheWeb

AB1_OTHER_CHLAMYDIAE

ornithosis: Disease caused by the Chlamydophila psittaci bacteria, usually transmitted from birds to humans.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

429209

1. Apply sex-specific rule

None

429209

2. Check conditions

None

429209

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A70-A74
  • Hospital discharge: ICD-9 — 073|076
  • Hospital discharge: ICD-8 — 073|076
  • Cause of death: ICD-10 — A70-A74
  • Cause of death: ICD-9 — 073|076
  • Cause of death: ICD-8 — 073|076

2 out of 7 registries used, show all original rules.

-

4. Check minimum number of events

None

-

5. Include endpoints

361

6. Filter based on genotype QC (FinnGen only)

348

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 3648 2804 826
Only index persons 3311 2609 702
Unadjusted period prevalence (%)
Whole population 0.07 0.08 0.02
Only index persons 0.08 0.10 0.03
Median age at first event (years)
Whole population 23.20 22.46 25.46
Only index persons 22.67 22.33 23.94

-FinnGen-

Key figures

All Female Male
Number of individuals 348 296 52
Unadjusted period prevalence (%) 0.11 0.13 0.03
Median age at first event (years) 25.61 23.07 40.08

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Relationships between endpoints

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Index endpoint: AB1_OTHER_CHLAMYDIAE – Other diseases caused by chlamydiae

GWS hits: -

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